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Two male scientists in lab coats work with a lasers.

Twisted but bright: Oregon State chemist uncovers unexpected design principle in fluorescent protein biosensors

By Hannah Ashton

A team of scientists led by Oregon State chemist Chong Fang has discovered a new way to visualize and track chloride ions in living systems, opening the door to accelerated research on diseases like cystic fibrosis, epilepsy and certain cancers. Published in the journal Proceedings of the National Academy of Sciences, the breakthrough challenges longstanding assumptions about fluorescent protein biosensors and introduces a sharper, more reliable tool for studying chloride-related processes in the body.

Chloride is essential to life, playing a critical role in maintaining proper fluid balance within the body, aiding in digestion and supporting nerve and muscle function. But despite its importance, it remains difficult to study inside living systems. Tracking chloride requires biosensors, specialized protein-based tools that change their fluorescence when chloride is present. Most existing sensors become dimmer when chloride binds, making it hard to distinguish signals from background noise.

The new biosensor, called ChlorON3 does the opposite: it lights up. That “turn on” response gives scientists a sharper, more reliable tool for tracking chloride activity in real time.

“We now have a powerful biosensor that is non-toxic, genetically encodable and can detect the ‘queen of electrolytes,’” said Fang, referring to chloride, the second most abundant electrolyte in the human body after sodium. Fang is a professor in the Department of Chemistry and currently holds the Patricia Valian Reser Endowed Faculty Scholar position.

What makes this biosensor shine is something no one expected. Using ultrafast laser spectroscopy with the resolution of a few millionth of a billionth of a second and advanced computer simulations, the team found that the heart of the biosensor, a component called a chromophore, becomes twisted and rigid when chloride is present.

These findings overturn the conventional belief that chromophores need to be flat, or planar, to glow brightly. Instead, the research shows that rigidity, not planarity, is the decisive factor in producing a strong fluorescent signal.

A cover of a scientific paper.

Pictured is an illustration of the molecular mechanism of a novel fluorescence turn-on chloride sensor ChlorON3, derived from the super bright green-yellow fluorescent protein mNenonGreen. Image credit: Cheng Chen and Chong Fang.

Ultimately, the study exemplifies the value of curiosity-driven, fundamental science.

“Many people focus on the leaves, on the various applications, but we need to understand the trunk of the tree,” Fang said. “If we understand the unifying principles behind biosensors, that’s going to be really impactful.”

The project also highlights the importance of interdisciplinary collaboration. Research Associate Cheng Chen in the Fang Lab at Oregon State led the study. The biosensor was engineered by collaborators in the Dodani Lab at the University of Texas at Dallas using proteins originally found in fish-like invertebrate animals called lancelets. Wayne State University scientists in the Walker Lab then used powerful quantum mechanical/molecular dynamics simulations to confirm that a twisted, rigid chromophore structure inside the protein pocket explains the biosensor’s enhanced fluorescence.

Together, their discovery not only offers a new tool for studying chloride in real time, but also reveals a universal design principle that could guide the future development of brighter, more versatile fluorescent sensors.

Two male researchers in lab coats look at lasers.

Chong Fang (left) and Cheng Chen (right) work in the Fang Lab at Oregon State.